Chromosomal location mapping for miRNAs

Question

[angajalaanusha]

I have chromosomal location or genome coordinates for list of miRNAs. Please advice me how can I make a figure to better visualize this data ?

I am interested in figures like this ( Figure 3) https://www.researchgate.net/figure/Genomic-organization-of-14q32-microRNA-miRNA-clusters-neighboring-the-DLK1-DIO3_fig3_51466062 https://erj.ersjournals.com/content/43/6/1740

[Kevin Blighe]

Cross-posted on Bioconductor ( https://support.bioconductor.org/p/121444/ ). When you do this, please indicate it in your question so that people do not spend time answering something that may already have an answer.

[angajalaanusha]

Sorry about this.I did not know both sites are connected.I appologize.

Answer 1

[bernatgel]

To produce something similar to the second figure you can use karyoploteR.

[angajalaanusha]

Thanks a lot. I am looking forward to try KaryoploteR.