Entering edit mode
5.5 years ago
SeaStar
▴
50
Hello! I used repeatmasker to find transposable elements in my genome. Repeatmasker produced some outputs. I have myfile.fa.out and I need to transform it into gff. There is a code or program to transform it into gff? Thank you.
I've also produced a bed file, but I don't know how to transform it to gff. Other outputs are a .cat file, and a .tbl. anyway I can run again repeatmasker -gff with my .fa.out file to obtain the gff?
Try genometools: gt bed_to_gff3 or BED-to-GFF in Galaxy.
No, with the original unmasked .fa (re-do masking).
Thank you very much :)