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5.6 years ago
kousi31
▴
100
I am using hmmer-3.2.1 to search against protein databases (pfamA and Gene3D) to filter unknown-transcripts with coding potential for lncRNA identification.
I found these hmm files (mentioned below) in their ftp site
File:funfam-frozen-hmm3.aln.tgz
File:funfam-hmm3.lib.gz
Which of the two files should I use?
Thanks in advance for your reply.