EBI MGnify metadata database for local query

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5.5 years ago

noodle ▴ 590

The NCBI SRA dataset had a nice SQL database that one can download for local queries. Does such a database exist for EBI and/or EBI/MGnify? Or perhaps a package for R/Python? Thanks.

EBI MGnify EBI MGnify • 896 views

ADD COMMENT • link updated 5.3 years ago by Biostar 20 • written 5.5 years ago by noodle ▴ 590

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Have you tried the biomaRt package for R? What are your exact needs out of this database/package?

ADD REPLY • link 5.3 years ago by Ram 44k

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