Multiple whole genome alignment tools ?

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5.5 years ago

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Hi everybody,

Do you any tools that could perform multiple whole genome alignment ?

I have 10 species of about 500Mb genome size.

I know already progressiveMauve and progressiveCactus but they are slow as hell..

If you have any recommendation, it would help a lot me a lot.

Thanks.

multiple whole genome alignment • 11k views

ADD COMMENT • link 5.5 years ago by Picasa ▴ 650

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You have a few eukaryotic (plant or animal) genomes,right?

In general, tools for whole genomes alignment:

For prokaryotes:

For eukaryotes:

These ENSEMBL examples (below) look informative:

And WIKI has an overview of most available tools:

ADD REPLY • link 5.5 years ago by natasha.sernova ★ 4.0k

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Yes these are eukaryotes but non mordel organisms (so not on Ensembl).

I ll take a look at the wiki page. Thanks.

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