Entering edit mode
5.5 years ago
cssulliv
▴
20
Hi,
I wanted to know if there is a script that I can use to count the total number of contigs that have x number of nucleotides (example. Determining number of contigs with 2,500 nucleotides in its sequence).
Thank you in advance for your help :)
Sure, there are several scripts. Plenty of suggestions on these threads:
script to check the size of given contig
How to get length of selected contigs within a fasta file generated by transcriptome assembly?