Transcription factor targets for Human and Mouse genes

Question

[pr2009]

Dear All,

I want to get transcription factor targets for my list of genes (For Human and Mouse)

I have found ENCODE Transcription Factor Targets database (The link is given below). But I am looking for some other databases also if available. I will really appreciate if anyone can suggest any other database.

http://amp.pharm.mssm.edu/Harmonizome/dataset/ENCODE+Transcription+Factor+Targets

Thank you

[swbarnes2]

Cross posted: https://bioinformatics.stackexchange.com/questions/8758/transcription-factor-targets-for-human-and-mouse-genes

Answer 1

[Batu]

Hi,

There are some other good databases like ChIP-X or TRANSFAC databases in Harmonizome. You can find by filtering 'transcription factors' from there. : http://amp.pharm.mssm.edu/Harmonizome/download

There is also a GitHub page that covers some databases for same purpose: https://github.com/slowkow/tftargets

Additionally, you can check RegNetwork: http://www.regnetworkweb.org

[pr2009]

Thank you for getting back

Answer 2

[ATpoint]

ReMap2018. Please also use the search function, this has been addressed many times before.