Consensus protein from aavf

Question

[pennakiza]

Hi all,

I used a tool called HIVmmer for variant calling using HIV illumina DNA seq data. What I get back is an aavf file, which I understand is the eqivalent of a VCF for aminoacid sequence. I'd like to know if there is any way that I can get a consensus sequence of my protein read from thia file?

Thank you!