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5.5 years ago
apl00028
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90
I am trying to determinate dS and dN in Mega7 of my Sanger sequecing sequences. I determinated with jModelTest that the best model for my sequences is Tamura Nei (TrN) gamma distributed. But, when I change the substitutions type in Mega:
Nucleotide to Syn-Nonsynonymous I have not TrN model I have others:
Nei-Gojobori method, Modified Nei-Gojobori method, Liu-Wu-Lou Method, Pamilo Bianchi-Li method, Kumar method
What model is equivalence to Trn ?
Thanks in advantage.
