how to download text format annotation file for hg38 genome?
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5.4 years ago
istloui1 • 0

how to download text format annotation file for hg38 genome? I simply need chromosome start, end, and gene name. But I need txt file.

rna-seq • 2.4k views
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Get the GTF file of your choice (uncompress to recover text version) from here. Cut the columns out that you need.

BED format files also available at this RSeQC link.

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5.4 years ago

all annotation files are txt version. I can't think of one that is binary (or anything else).

Simply download the annotations as GFF or GTF, those will for sure hold the info you need. They are even tab-delineated files so quickly extracting certain columns is easy

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