RNAseq data anti-pd1 treatment

Question

[guillaume.rbt]

Hi all,

I'm currently gathering cancer RNAseq data, looking for public dataset of patients treated with anti-pd1 immunotherapy. I was wondering in which public database I was more likely to find this type of sequencing data.

Thanks

Answer 1

[Bastien Hervé]

On NCBI BioProject you can find some

https://www.ncbi.nlm.nih.gov/bioproject/PRJEB23709

[jimmy_zeng]

Great dataset.

Is there any way to download the expression matrix(counts) for PRJEB23709 directly, or we have to download the raw SRA data to process them by using LINUX ?

[Bastien Hervé]

You will have to reprocess

Answer 2

[Kevin Blighe]

TCGA has it: C: TCGA immunotherapy treated melanoma data