Embedding NCBI standalone Blast or SequenceServer in a Website
1
3
Entering edit mode
8.3 years ago
kabir.deb ▴ 90

I'm planning to make an online Database on sequence data which can be accessible through BLAST (NCBI standalone blast or SequenceServer) search tool where user can choose one or more databases (options defined by me). Users also can opt other probable blast parameters like E value cutoff, identity cutoff, coverage cutoff etc. (My website domain is hosted in Arvixe) My question is that where can I get I suitable guide for doing that, as my background in biology and I'm beginner in bioinformatics?

database arvixe mysql phpMyAdmin ncbiblast • 2.7k views
ADD COMMENT
0
Entering edit mode

Guess that would depend on the programming language of your choice. In case its perl, CGI is a good start http://perldoc.perl.org/CGI.html . Many good tutorials are available in the web for the perl CGI module.

ADD REPLY
5
Entering edit mode
5.5 years ago
Yannick Wurm ★ 2.5k

Apologies for the slow response - yes it is easy to integrate sequencserver as part of a bigger websites. (e.g. via ngnix). This is documented at https://sequenceserver.com/ under advanced configuration

ADD COMMENT

Login before adding your answer.

Traffic: 2192 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6