Bootstrap values on the phylogenetic tree in Ape r package

Question

[Denis]

Hi there, I've constructed the tree with bootstrap supports in Ape package. But i'd prefer to get bootstrap values in percentage not in absolute number of replications. How can i do that in Ape?

[Jean-Karim Heriche]

Access the values in the returned object and divide by the number of bootstrap samples.

[Denis]

There is no slot named node.label in my object of class 'phylo' (i use ape 5.3). So i can not execute something like:

tree$node.label <- as.numeric(tree$node.label)/1000

[Benn]

Maybe show then what you do have. Some code might also be useful.

Answer 1

[Denis]

I solved the issue by the R code:

plot(stree)
nodelabels(round(myBoots/1000*100),adj = 0.7)

where myBoots is numeric vector containing my bootstrap values