Question

WGCNA: How to plot gene-trait correlation heatmap

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5.6 years ago

wenbinm ▴ 40

Hi there, Is there a specific function in WGCNA that can make this kind of plot? Dendrogram with a heatmap showing Pearson correlation with each gene Or I shall DIY a heatmap myself and put it under the dendrogram. The paper's supplementary info didn't write about this plot in detail. Thanks a bunch!

RNA-Seq WGCNA R • 2.3k views

ADD COMMENT • link updated 5.6 years ago by Buffo ★ 2.4k • written 5.6 years ago by wenbinm ▴ 40

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The image link: https://ibb.co/jz6hLZW

ADD REPLY • link 5.6 years ago by wenbinm ▴ 40

score 0 · Answer 1 · 2019-06-28

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5.6 years ago

Buffo ★ 2.4k

It looks like complexHeatmap

ADD COMMENT • link 5.6 years ago by Buffo ★ 2.4k

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ComplexHeatmap is a good package. Thanks for sharing....

ADD REPLY • link 5.6 years ago by wenbinm ▴ 40