description of cuffmerge output

Question

[kahmadian52]

Hi

I run the program cuffmerge "to create a single merged transcriptome annotation" and I got a file "merged.gtf" with lines like:

1   Cufflinks   exon    31556   31607   .   +   .   gene_id XLOC_000001;    transcript_id   TCONS_00000001; exon_number 1;  gene_name   GOLGB1; oId CUFF.2.1;   nearest_ref ENSGALT00000081071; class_code  j;  tss_id  TSS1;

This is a row of cuffmerge output.

What is the concept of each title?

Thanks a lot

Answer 1

[lakhujanivijay]

Hi kahmadian52

Look at the documentation for StringTie - the format should be same