Not found vcffilter for variant calling
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5.4 years ago

hello guys, I would like to run the next command line

freebayes -f ref.fa aln.bam | vcffilter -f "QUAL > 20" >results.vcf

No command 'vcffilter' found, did you mean:
 Command 'vcf_filter' from package 'pyvcf' (universe)
vcffilter: command not found

How do I execute the vcffilter ?, I need help
sequencing next-gen SNP • 1.4k views
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Start by installing it and putting it into PATH.

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From here: https://github.com/vcflib/vcflib

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