Accessing ENCODE data through R

Question

[salvatore.raieli2]

Hi everyone,

I would like to download some ENCODE data. I want to download which genes present in their promoter the binding of particular Transcription Factor. Starting from a trasncription factor I would like an easy way to retrieve a gene list (not sequences, but more processed data) where they find that Transcription Factor. The best, will be a way to access this data through R.

Thank you for your help

[zx8754]

Maybe ENCODExplorer package?

Answer 1

[ATpoint]

If it is human, try the ReMap database and intersect your regions with it.

[salvatore.raieli2]

thank you, I downloaded the bed file for the TF I needed