Entering edit mode
5.4 years ago
spela.salamon
•
0
I would like to take a series of methylation markers (CpGs) and match them to a set of GWA SNPs. I have been trying to figure out how to do this kind of thing in PLINK.
There can be several problems on the way: data in different genome builds, finding SNPs either in LD or with effects on CpG sites...
If anyone has done something similar, has resources or instructions, or any particular tips, i'd be interested. Sorry for the n00b question but i'm a doctor, not a bioinformatician :) Live long and prosper!
