How To Download Bulk Est Sequence With Est Id'S

Question

[Kiran]

Hi all,

I have some around 30k EST Id's i would like to download the corresponding sequence to ID's in a Batch or Bulk so HOW DO I Do THAT, i tried in batch ENTREZ but it takes only Trnscpt IDS, so is there any module or any bioperl code to fetch the sequence or any other tool, i searched but could't get any, Still am a beginner to bioperl modules.

Thank You

[Neilfws]

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Answer 1

[Neilfws]

Batch Entrez will accept any UID recognised as an Entrez database ID, not just "transcript IDs". Just select EST under the Database option.

That's assuming of course that by "EST Ids", you are referring to NCBI Entrez identifiers. It would help if you gave some examples.

[Kiran]

Yeahh Thanx neil, it worked out same as u told, with these ID's AU086080.1 AU086082.1 BM276504.1 BM276505.1