Coverage of exome

Question

[fatemehpeymani]

Guys, I am analyzing exome seq data. I have bam and sam file and I am wondering how could I get coverage from such files? I am looking for the number of reads with 10X 20X 30X coverage... Thanks in advance for your response

[ATpoint]

Check that Similar posts box on the right

[Sej Modha]

Please change the type of the post to Question from Tutorial.

Additionally, have a read through Brief Reminder On How To Ask A Good Question

This may help as a starting point: Tools To Calculate Average Coverage For A Bam File?

Answer 1

[VBer]

You can use QualiMap :D