Running mutect2 without PON
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5.3 years ago

Hi, I have data from targeted sequencing for 4 cancer patients. I want to know if I can perform variant calling for this data with mutect2 without a panel of normals. Please help

mutect2 • 2.2k views
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Please use the search function, this has been asked many times before. Start with this one and then keep searching.

Using GATK's HaplotypeCaller or Mutect2 for somatic cancer samples with no normal panel

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