Hello everyone
I'm using GOVenn in RStudio to find overlapping differentially expressed genes between datasets.
My command:
GOVenn(dt1, dt2, d3, title = "Overexperessed genes", label = c("CPC vs CPP", "CPC vs aCPP", "aCPP vs CPP)), plot = F)
The result is a nice Venn diagram and tables of overlapping genes presented in the Console. There are thousands of genes in each table, so the result is not fully displayed. I don't mind much if it's not fully displayed, but I want to export those tables into .csv files and can't find an instruction for this.Could anyone please help me with this issue?
Thank you very much.
Try to read and understand the help function (
?GOVenn
), it says that theGOVenn
function returns a list of two items. The first item can be accessed byplot
, and the second withalist(table)
. Did you try that?Thank you very much. It's not very straightforward but I can get the table now