Where can I find a list of mitochondrial tRNA locations?
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5.3 years ago
blur ▴ 280

Hi,

I am looking for genomic locations of tRNAs. It's not in gtRNAdb, mitotRNAdb (no genomic locations). I also didn't see it in gencode and a google search didn't help. Any ideas what I can do? Specifically I need human and mouse.

Thanks!

tRNAs • 862 views
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A simple google search turned up:
mitotRNAdb: http://mttrna.bioinf.uni-leipzig.de/mtDataOutput/
GtRNAdb: http://gtrnadb.ucsc.edu/Hsapi19/
mitochondrial tRNA gene database: http://mamit-trna.u-strasbg.fr

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as I wrote in my post, none of these appear to have the information I require gtRNAdb specifically states it does not include NUMTs, the other two as far as I can see have no genomic locations,

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5.3 years ago
GenoMax 147k

How about RNAcentral. Genomic locations were included for a couple of entries I checked :

Human tRNA
Mouse tRNA

I don't see any mitochondrial entries though.

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Perfect! thanks!

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