Family ID/Name in PANTHER

Question

[yp19]

Hi all!

i'm trying to find a table with just PANTHER family ID and Family name, for example:

PTHR10590:SF4   SODIUM/NUCLEOSIDE COTRANSPORTER     
PTHR11055:SF37  SUBFAMILY NOT NAMED
PTHR11055:SF41  ATP-SULFURYLASE 3, CHLOROPLASTIC    
PTHR11142       PSEUDOURIDYLATE SYNTHASE

The closest I was able to get to this was in the PANTHER14.1_HMM_classifications file here. But the format is strange and has a lot of added information that I don't need.

Anyone know where I can find this?

Thank you!

Answer 1

[Mensur Dlakic]

This seems to be a tab-delimited file. This should do the trick:

awk -F "\t" '{print $1, $2}' PANTHER14.1_HMM_classifications > IDs_and_names.txt

It separates the fields in the file by tab characters ("\t") and redirects the output (columns 1 and 2 ) into IDs_and_names.txt.

[yp19]

Thank you. It appears that way. Just shocking that when I process it this way, almost 50% (47.6%) of family IDs have a blank family name. But I guess that's just what it is!