sirna analysis database for plants
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5.4 years ago
bioinfo_ga ▴ 70

Hi all I want to do sirna analysis for plant specie (pomegranate) can anyone suggest any database or source for downloading sirna sequences.

Thanks
rna-seq • 1.1k views
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Plenty of siRNA in RNACentral but no pomegranate.

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can i download all plant sirna from RNACentral and do homology approach method (Blast) for pomegranate sequences maybe with e-5

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A look in SRA for taxid of pomegranate ( https://www.ncbi.nlm.nih.gov/sra/?term=txid22663[Organism:noexp] ) . The first one is miRNA

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