Cancer Cell Line WGS

Question

[denis.k]

Hey Biostars!

Was wondering if someone could help me out with this problem. I am looking for WGS data from cancer cell lines but have struggled to find any repositories online that store the BAM's or FASTQs. Does anyone have any insight on where I can look?

Thank you in advance!

[Joe]

NCBI will house such data, but you will need to search for appropriate bio projects/cell lines etc so you will need to know what you’re looking for to some degree.

Answer 1

[GenoMax]

Use sra-explorer to look. If you search with "cancer cell line WGS" there are lots of results for fastq data. Restrict as needed. Increase number of results as needed.

Answer 2

[ATpoint]

Here are a couple from Diffuse Large B Cell Lymphoma.