Why there is a difference in Kallisto o/p vs FASTQC o/p?

Question

[WUSCHEL]

Hi,

For some of my RNAseq samples, I see there is a difference in "processed" number in .log file and fastqc.html file?

What may be the reason for this?

Also,

Could someone explain, what is the difference between, processed reads & reads pseudoaligned

[Kevin Blighe]

For Kallisto-related issues, you can post on their Google group: https://groups.google.com/forum/#!forum/kallisto-and-applications

[WUSCHEL]

Thank you Kevin. I'll :)