appropriate ticketing system for bioinformatians
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5.2 years ago
microfuge ★ 1.9k

Hello,

I would be grateful for advice on good ticketing systems for bioinfo support. Do standard IT ticket systems like Fork8 etc are appropriate to use in genomics or. Earlier I used gitlab issues but the clients also needed to have a gitlab account. I can think of a few requirements but please feel free to add to them.

  • Clients can no see each others tickets (this excludes deploying biostars instance)

  • Good formatting support for code and comments

  • Possible git/gitlab integration

Also if the ticketing system has helped you in your evaluation/tenure/promotion please let us know.

ticketing • 1.2k views
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our support desks use OSTicket I think. Not sure if it covers your needs.

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5.2 years ago
Emily 24k

We use Request Tracker in Ensembl. All tickets are private and can be conducted entirely by email, so no login is required by requestors. You can also comment on a ticket without a requestor seeing it, which can be useful for keeping track of your own internal investigations.

In RT, you "take" a ticket, then you are the requestor's only point of contact. You can change the settings so that everybody who follows the queue sees all emails, or so that only the ticket owner sees all subsequent emails. You can "steal" tickets from someone if it becomes apparent that someone else is better equipped to deal with it, or if the owner goes on holiday or something.

It's not great for formatting. Generally the interface is a bit clunky. You can format your messages to include code and stuff, but it's certainly not as easy to use as something like BioStars. Since the requestor is using email, you suffer from all kinds of dodgy formatting that their email client will do to you. Mostly I send stuff like scripts as attachments.

I'm not sure if you can integrate with git/gitlab. It has an API to allow you to write custom scripts in Perl to do quite a lot of stuff, so it's probably possible.

It's fairly easy to search and generate graphs and stats of your search results. I personally haven't used RT to help justify a promotion or similar, but you could certainly show that an individual took some percentage of tickets and resolved them all within a certain space of time (although this tells you nothing about the difficulty of those tickets, it could be like comparing the number of operations and survival rate of a brain surgeon to one who mainly does C-sections).

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Thanks so much Emily for your detailed and thoughtful reply.

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5.2 years ago
Carambakaracho ★ 3.3k

In our company, we use internally Attlassian Jira and Confluence as ticketing systems and documentation systems. Both offer neat formatting options and git integration. It is used in quite a few companies and some research organizations, too.

I don't know their outward facing option though, we use a different solution for that (which I can't recommend).

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