Entering edit mode
5.2 years ago
khn
▴
140
Hello,
I want to check the epistatic effects for two alleles that are significantly associated with a phenotype. Cases and controls are both about 30 patients. Also this is a candidate case control analysis.
I found some packages. What would you think?
EIP http://statgen.psu.edu/software/eip.html
MDR http://www.multifactordimensionalityreduction.org/
Which method is the best to check the epistasis? Or do you still recommend to use plink?
Thank you in advance!
