From PHASE to HaploView

Question

[veronicaschroeder78]

I finally built a PHASE input file (.inp) and my analysis was executed successfully.

Now I have phased output which consists of several files:

• test4.out_freqs : haplotype frequency estimates
• test4.out_pairs : most likely haplotype pairs for each individual
• test4.out_recom : estimates of recombination parameters
• test4.out_monitor : file for monitoring convergence

I would like to visualize the haplotypes with HaploView.

Is there any tool or script which converts the output from PHASE to any HaploView format?

[janetw]

Hello, Were you able to find a solution for this? I am also trying to do the same thing. Thanks, Janet