Tool for obtaning genes modulated by a list of TF
1
0
Entering edit mode
5.2 years ago
Eisuan ▴ 20

Given a list of TFs, are there tools that are able to give me the list of genes known to be regulated by these TFs?

gene • 1.1k views
ADD COMMENT
2
Entering edit mode
5.2 years ago
natasha.sernova ★ 4.0k

1) See the post below. It looks very close to your question.

Tf And Gene(S) Regulated By Them

2) The following post looks as a repeat of your question, but the answer is not direct IMHO.

extracting targe genes of a list of TFs

3) If the information above is not enough, try to look at this article as well:

iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections

Rekin's Janky, Annelien Verfaillie, Hana Imrichová, Bram Van de Sande, Laura Standaert, 
Valerie Christiaens, Gert Hulselmans,  …

https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1003731

4) What species interest you? There are some plant similar questions in 'Biostars', for example.

But you may need information like that:

Tf-Target Enrichment Analysis

ADD COMMENT
0
Entering edit mode

Thank you so much :) Your suggestions were really helpfull

ADD REPLY

Login before adding your answer.

Traffic: 1611 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6