converting SRA to Fastq file by fastq-dump

0

Entering edit mode

5.3 years ago

tikshyadav19 • 0

how to convert SRRXXXXXX.sra to SRRXXXXXX.fastq using fastq-dump using linux comands?

sra to fastq fastq-clump • 1.9k views

ADD COMMENT • link 5.3 years ago by tikshyadav19 • 0

0

Entering edit mode

Better to not download SRAs in the first place and just get the FASTQs: Fast download of FASTQ files from the European Nucleotide Archive (ENA)

ADD REPLY • link 5.3 years ago by igor 13k

1

Entering edit mode

If you still insist on using SRA, on the bottom of that tutorial there is a short section on that as well. Still, simply reading the fastq-dump manual would have answered that question as well ;-)

ADD REPLY • link 5.3 years ago by ATpoint 86k

1

Entering edit mode

With ENA, there is not even a need a to read any manual :)

ADD REPLY • link 5.3 years ago by igor 13k

1

Entering edit mode

True. I am a big fan of ENA, that is why I wrote that tutorial in the first place :)

ADD REPLY • link 5.3 years ago by ATpoint 86k

Login before adding your answer.