Multi samples VCF file manipulation
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5.2 years ago

I have VCF file with multiple samples. How to list down the SNP present in more than one sample with sample ids.
vcf • 1.2k views
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merge the vcf using , for example, 'bcftools merge'. Then filter using, for example, 'gatk SelectVariant' , or 'bcftools view -i'

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