how to create chain files using two genomes of the same species

Question

[hzaujsxu]

I am trying to use liftover, do you know where I can find chain files for apple(Malus domestica)? or how I can create one?

[microfuge]

I use this https://github.com/wurmlab/flo . Works quite nicely and is easy to run.

[hzaujsxu]

ok,I will try it. Thanks a lot.