Entering edit mode
5.2 years ago
mikhael.manurung
▴
50
Dear all,
I would like to analyse a publicly available single-cell RNASeq dataset (for example this one). It is very easy to download the data, but I am at my wit's end in trying to import the data into a Seurat
object (or any other packages in R).
I know that I can use readMM
function from the Matrix
package to read the MatrixMarket file. However, how could I assemble these data together so that I can import them into R?
Thank you for your responses.
Best regards, Mikhael
The Raw quantification files (MatrixMarket archive) data contains a matrix, its row names and its column names. I think R has the function to convert matrix to dataframe, such as as.data.frame?