Importing EBI Single Cell Expression Atlas Data into Seurat
0
2
Entering edit mode
5.2 years ago

Dear all,

I would like to analyse a publicly available single-cell RNASeq dataset (for example this one). It is very easy to download the data, but I am at my wit's end in trying to import the data into a Seurat object (or any other packages in R).

I know that I can use readMM function from the Matrix package to read the MatrixMarket file. However, how could I assemble these data together so that I can import them into R?

Thank you for your responses.

Best regards, Mikhael

EBI RNA-Seq Seurat • 1.6k views
ADD COMMENT
0
Entering edit mode

The Raw quantification files (MatrixMarket archive) data contains a matrix, its row names and its column names. I think R has the function to convert matrix to dataframe, such as as.data.frame?

ADD REPLY

Login before adding your answer.

Traffic: 2108 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6