Importing EBI Single Cell Expression Atlas Data into Seurat
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5.2 years ago

Dear all,

I would like to analyse a publicly available single-cell RNASeq dataset (for example this one). It is very easy to download the data, but I am at my wit's end in trying to import the data into a Seurat object (or any other packages in R).

I know that I can use readMM function from the Matrix package to read the MatrixMarket file. However, how could I assemble these data together so that I can import them into R?

Thank you for your responses.

Best regards, Mikhael

EBI RNA-Seq Seurat • 1.6k views
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The Raw quantification files (MatrixMarket archive) data contains a matrix, its row names and its column names. I think R has the function to convert matrix to dataframe, such as as.data.frame?

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