bcftools -trim-alt-alleles errors

Question

[shraimrawan]

Hi,

I am trying to trim alternate alleles in my vcf file. I keep getting the following error. This is the command I am using to trim my file. I am new to this so any help would be appreciated.

bcftools view --trim-alt-alleles veo.remicade.selvar.vcf > veo.remicade.selvarv3.vcf

[E::bcf_remove_allele_set] Unexpected number of values in FORMAT/PL at 1:109339414; expected Number=G=15, but found 28
Error: Could not trim alleles at 1:109339414

[Brice Sarver]

What does the record for that position look like in your VCF?