Entering edit mode
5.1 years ago
ashaneev07
▴
40
Hiii...augustus has stopped working by showing the following error. How do I fix this? .Please help me to solve this.Thankyou..
Segmentation fault (core dumped) augustus --gff3=on --species=maize PRN01.scaffolds.fa > PRN01.augstus.gff3
this usually points to lack of memory for running the job.
Can you give us an idea of the specs of the machine/server you are running this on? (or of the job parameters if it is running on a cluster)?
sure. Using PC with following specifications. memory 16 gb Os type 64 bit disk space 2 tb
hmm, 16Gb mem might be too low I think (especially for maize)
any idea about the mem-usage of this commandline?
Do you have access to a higher mem machine? if so, try to run it over there with more mem
free -m command shows lyk dis..
You may consider monitoring the memory usage of the program via
top
(or other methods) to see how much memory it's using while actually running.Here is the outcome of top
Is this solved or do you need further assistance?