Entering edit mode
5.2 years ago
drragill
▴
10
Hi, I want to calculate the divergence time of genes. Can somebody guide me on how to use the KaKs calculator software? Many thanks!
Please read the tool documentation, follow it accordingly, and then, if you encounter problems, post a question here. In the question, be as detailed as possible, for example, including a link to the tools page, and try to include sample data to reproduce the error.
Are you referring to the Ka/Ks calculator found here?
https://kakscalculator.herokuapp.com/
Dear h.mon and Dave Carlson,
Many thanks for your kind reply. But I encounter a problem as...Original Sequence has unconventional nucleotides. My input sequence (both) was in fasta format as below...
ATGAAAGGCACGTTATCACCCGCTCTAGGGAACCTCGGATCTCTCCAGGTTTTGTTCATT TCTGGAACCAAGTTCATTGCCGGCTCGATTCCCAACAGCTTCTCTAAGCTAACTAGTCTT ACTCAGCTCGTCCTCGATGATAACTCTCTCCAAGGCAACGTTCCTTCTTGTTTAGGCCAT CTTCCGTTCTTGGAGATTCTTTCATTGGCTGGAAACCGTTTCTCAGGTGTTGTCCCAGCG AGTTTGGGGAGCTTGAGAAGCCTCTCTGTGATGATGTTGGCTCGAAACTCTCTCTCTGGT CCAATCCCAGTGACGTTCAAGAACCTTGTCAAGCTTCAGACTCTTGACCTCAGCTTCAAT ATGTTATCTGGACCGATACCAGACTTCATAGGCCAGTTTCGGAATCTAACAACTCTTGAT CTCTCCAGCAACAGATTCTCCGGGGGACTACCGGTTTCTGTTTACAACTTGGGGAAGCTT
Could you please guide me on which format I should input..in detail. Many thanks!
Sincerely
This (these?) sequence is not in fasta format, and I don't see any unconventional characters in it.