Genome tracks, Genome viewer, Genome Track Data

Question

[sc@791]

Hi!

I am looking for best tool represent different format files into single genome track file. I am working on Arabidopsis and I want to show methylation and nucleosome data on superimposing on genome coordinates. I have files in BigWig, Bed and BAM format.

Any help is much appreciated.

Thank you!

[ATpoint]

IGV. If you want a more elaborate answer please add details on how you plan to present these data.

[sc@791]

Thank you! for your reply. I want to plot chromosome wise Differential methylation regions, Differential Nucleosome positions, and Splice Junctions all together against reference genome. I have all files in BED format.

Thank you! Best

[lieven.sterck]

GenomeView, which (in contrast to IGV) allows editing as well.