total RNA-seq public data with rRNA

Question

[andrewdchen]

Hi, I was wondering if there are public RNA-seq data sets that have not been depleted with rRNA. Or even better, if there were public single cell RNA-seq data sets that have not been depleted with rRNA? I want to compare the relative abundance of different rRNA transcripts, hopefully across cells.

[c.chakraborty]

You may search Array Express and GEO omnibus. Look at the protocol carefully and download the raw files according to your experimental question. Sorry for not being much of a help.