Which is the best r package for co expression analysis

Question

[ghataksoumyakanti]

Hi guys,I am doing microarray analysis on microarray data fr prostate cancer.which is the best r tool for gene coexpression anlysis...WGCNA,PETAL OR CEMITOOLS OR COEXNET....can someone tell their pros and cons or atleast send an article link which compared these

[WouterDeCoster]

What have you found when trying to find some answers yourself? If you ask us to search for literature, why don't you do that yourself?

[ghataksoumyakanti]

No literature wise I have read...I am asking if someone has experienced a better outcome and better data after using one of these that distinguisges from other tools.

Answer 1

[Kevin Blighe]

If you want a ready-made tutorial, then try this one by me: Network plot from expression data in R using igraph

WGCNA is very popular, but you seem to be struggling with the tutorial?

Please read this: Gene co-expression analysis for functional classification and gene-disease predictions.