Finding Motif Representation Of A Given Secondary Structure Of Rna Sequence

Question

[Cinita Mary Mathew]

Name of any site or tool where i can get the motif representation if i give secondary structure of RNA Sequence

[Qdjm]

You need to clarify. Motif representations are usually summaries -- do you have >1 RNA secondary structure and you want to find the common elements?

Answer 1

[Peter Kovac]

Our lab has developed RNArobo, maybe it can help you.

RNArobo is an RNA structural motif search tool. RNArobo can search sequence databases in FASTA format for a motif defined by a descriptor, which can specify primary and secondary structure constraints. ... RNArobo enables you to allow nucleotide insertions in a structural element.