Multiple genome comparison for new genetic markers

Question

[agata88]

Hi all!

Do you know any tool that can compare multiple genomes and define differences between them (genetic variants) and cluster them according to close identity?

Many thanks to any help,

Best,

Agata

[reza]

There are so many resources that can help you in this field; You just have to do a simple search in Google. like this:

Variant Calling Pipeline: FastQ to Annotated SNPs in Hours

[agata88]

Well, I am not asking about simple SNP identification but about whole multiple genome comparison for marker identification. Sorry if I didn't make it clear. Best, Agata

[agata88]

I know how to do it in multiple steps, I am wondering if there is a ready-to-go tool. Best, Agata