problem installing prokka

Question

[schlogl]

Hi guys I am trying to install prokka with conda according to this : https://salsa.debian.org/med-team/prokka
I don't want to install with apt-get. I got this message:

> ERROR conda.core.link:_execute(700): An error occurred while
> installing package 'bioconda::perl-algorithm-diff-1.1903-pl526_2'.
> Rolling back transaction: done [Errno 13] Permission denied:
> '/home/paulo/anaconda3/lib/site_perl/5.26.2/Algorithm' ()

I tried to install perl-algorithm-diff-1.1903-pl526_2 but It didnt worked at all.

Some of you guys have any experience like that and what did you do to solve it?

Thank you

PS- Tried with the apt-get. It didn't work either!

[cpad0112]

check the permissions of : /home/paulo/anaconda3/lib/site_perl/5.26.2/Algorithm

[schlogl]

How could I do that?

[GenoMax]

Show output of ls -l /home/paulo/anaconda3/lib/site_perl/5.26.2/Algorithm

[schlogl]

ls: cannot access '/home/paulo/anaconda3/lib/site_perl/5.26.2/Algorithm': No such file or directory

[gb]

Did you installed conda as sudo? And try to use it as a 'normall' user?

[schlogl]

Hi yes I installed conda as sudo. No I dont tried as a normal user, because it is my personal desktop and just I have access to this pc.

[ATpoint]

That is not what gb means, but he/she means if you ran that prokka installation without sudo which makes it a normal user process. Anyway, I recommend to reinstall conda without sudo which is neither necessary nor beneficial, and then repeat the prokka installation.