NCBI GEO: Empty FTP directory!
0
0
Entering edit mode
5.0 years ago

Hi,

I want to download some Series Matrix Files from geo, however, its FTP directory is empty. Does NCBI move its GEO datasets somewhere else? How can I access them?

Thank you

geo ncbi • 1.3k views
ADD COMMENT
0
Entering edit mode

It appears to be down at the moment - I'm sure it will be restored (relatively) shortly.

ADD REPLY
0
Entering edit mode

Thank you jared.andrews07. How sure are you? I'm pretty sure that it was down about 3 weeks ago, too.

ADD REPLY
0
Entering edit mode

I have definitely downloaded data from it within the last 3 weeks, so I'm not sure about that. I also think there would be a much larger outcry if it had been down for so long.

ADD REPLY
0
Entering edit mode

mirzaienahal : Please email GEO support and let them know. NCBI website is so large that parts break at times. Support folks are generally good about fixing things in 3-4 days once they are notified something is not working.

ADD REPLY
0
Entering edit mode

Yeah, you're right. I would definitely do that next time. Thank you.

ADD REPLY
0
Entering edit mode

Do you have an example GSE I can take a look at? I just accessed the site and I can see the matrix files. Example: ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84988/matrix/

ADD REPLY
0
Entering edit mode

Yeah, it appears to be fixed now.

ADD REPLY
0
Entering edit mode

Yes! It's working now. Thank you jared.andrews07 and vkkodali.

ADD REPLY

Login before adding your answer.

Traffic: 1708 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6