Tool to calculate insertion, deletion, mismatch rate in alignments?

Question

[BioinformaticsLad]

I know samtools stats can quantify the mismatch rate in SAM files. But are there any tools that can also calculate insertions and deletions?

[BioinformaticsLad]

Alfred turned out to be exactly what I was looking for.

Answer 1

[h.mon]

Mismatch and Indel statistics from BAM/SAM file