region amplified by primers designed for bisulfite
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5.0 years ago

hi in many article i find the seq of primers designed for bisulfite sequencing, but i can't find the region that is amplified by those primers since they are compatible with changed cytosine to uracil. can you tell me a way I can find the seq that is amplified?

alignment gene sequencing • 865 views
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What exactly is the problem. Please give representative examples.

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for example in an article the promoter of oct4 gene has been studied for methylation through bisulfite sequencing.in the article the seq of the primers are available but if i put these primers in the ucsc in silico pcr no region will be amplified because the seq of primer has been designed supposing that unmethylated cytosines have been converted to uracil. my question is do you know a way I can find the region that is amplified by these primers in genome?

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