Entering edit mode
5.2 years ago
jan
▴
170
Hi,
I'm trying to view structural variants (>50bp) from PacBio long read sequencing on IGV. I have been unable to hide the small indels (likely errors) using these settings:
∗ Alignment Track Options: Hide indels < 10 bases ∗ Coverage Track Options: Coverage allele-fraction threshold: 0.25 ∗ Tick: Quick consensus mode ∗ Press OK
Any suggestion to improve visualization of PacBio sequencing on IGV?
I'm using IGV 2.7.2
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