Hi,guys~Need your help. I got tens of thousands of protein seqs. Because they're from a rare organism and have too many seqs, DAVID and web-based blast2go are unsuitable. I tried Interpro scan,then a xml file was given. In this xml, each protein ID contains several GO IDs. Now I wanna do some GO analysis based on it(eg,keep the lowest go terms and do enrichment analysis,may need some statistical charts .And it would be great if can get EC for kegg). I once tried this xml with "Import interpro xmls" from blast2go interface,but nothing happened. Could you plz give me some clue for how to deal with this xml?A program/soft suite or perl module will be fine. Or other way to do GO/kegg analysis without interpro results? Thanks a lot!
Here are some related posts that will help:
http://biostar.stackexchange.com/questions/16491/interpro-enrichment-any-organism
http://biostar.stackexchange.com/questions/1278/tools-for-visualizing-overlap-between-go-terms
Hey，SES,thanks for your links. First link talked about DAVID,it's not suitable for me.In 2nd link, REViGO is web-based too,I tried and made it collapsed -.-! That Enrichment map plugin for Cytoscape can't do either.